How do I filter a multi-individual BCF file for genotype probabilities

0

I have BCFs with over a hundred individuals. I want to filter the files so that any genotype call with a max(GP) < 0.9 is removed. I don't want the whole site removed, I just want that individual genotype data removed for that site. I can't figure out how to do this without doing on each BCF individually.

Any suggestions?


vcf


bcf

• 109 views



Source link