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2 hours ago by

Hello everyone,

I'm currently trying to visualize the pileup of a sample to determine if there is a 5 Base Pair deletion and if there is another deletion 1 Base pair down stream.

I have access to the following files for the sample:
- FastQ
- Bam
- Bam.bai
- Pileup.txt
- VCF

I have access to BaseSpace by Illumina, Galaxy, and IGV.

Could anyone tell me how to visualize these alignments and how to see the pileup. I just need to know what files and what tools to use. It would be very much appreciated. Thank you for any help!



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