How can I revert back the ensemble vep annotated positions to vcf positions?

0

Sample VCF positions:

CHROM   POS     ID  REF  ALT
chr1    939570   .  T   TCCCTGGAGGACC
chr1    3411794  .  T   C
chr1    1043223  .  CCT C
chr1    22511093 .  CTT CT
chr1    24454031 .  CT  CTT

VEP annotted positions

Positions            Allele
1:939570-939570      CCCTGGAGGACC
1:3411794-3411794        C
1:1043223-1043225        -
1:22511093-22511095      -
1:22511093-22511095      T
1:24454031-24454032      -
1:24454031-24454032      TT

I wanted to revert back VEP positions to VCF positions to remap certain parameters in the VCF file.

Any help appreciated!!!


VCF


ensembl


VEP

• 18 views



Source link