2 hours ago by
I have tried different hmmer binaries, but orthofiller keeps failing with:
Error: hmmerfm is not a recognized sequence database file format
I suspect there is some sort of integration problem with nhmmer and orthofiller, but I'm curious if anyone has run into this problem using orthofiller or some other program. Trying to run orthofiller using two organisms. I wrote a script to convert gff to gtf and from colleagues' experiences we suspected there is some gtf error, but now I'm not so sure.
