I have tried different hmmer
binaries, but orthofiller
keeps failing with:
Error: hmmerfm is not a recognized sequence database file format
I suspect there is some sort of integration problem with nhmmer
and orthofiller
, but I'm curious if anyone has run into this problem using orthofiller
or some other program. Trying to run orthofiller
using two organisms. I wrote a script to convert gff
to gtf
and from colleagues' experiences we suspected there is some gtf
error, but now I'm not so sure.