Help in testing alligning this one RNA-seq data

0

Hi,

I am new and learning RNA-seq bioinformatic analysis on my own. Can someone try alligned one of the run in GSE147846 study dataset.
I try to HISAT2 using useGalaxy and everytime I did I get overal allingment less thant 2%. This cannot be right.

Just want to know whether I am doing it right or wrong only.

Thank you in advance!


rna-seq


hisat2

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