Question: GSEA from broad institute normalization method

gravatar for Rob

4 hours ago by

Hi freinds

I have HT-Seq raw count data of 19000 coding genes and 300 samples of two groups (treatment and control).
I want to do gene set enrichment analysis with GSEA from broad institute.
do I need to normalize my data before GSEA?
How should I normalize for this purpose?

Thanks

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modified 3 hours ago

by

Kevin Blighe69k

written
4 hours ago
by

Rob20



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