SPAdes has "trusted contigs" option, but it's not really reference-based assembly. I know velvet has that option, but I don't find it user-friendly. Is there any other reliable tool for reference-based assembly.
SPAdes has "trusted contigs" option, but it's not really reference-based assembly. I know velvet has that option, but I don't find it user-friendly. Is there any other reliable tool for reference-based assembly.