gravatar for Klios3th

2 hours ago by

Hi,

How would I go about getting a distance matrix with specific models (GTR, WAG, HKY) for my msa? I need it for a python project. I found code for the older models like Kimura, Tamura, logdet but the newer models are somehow much harder to find.

I know that RAXML use these models for their tree phylogeny but i dont know how to extract their distance matrix?

Does anyone have any insight?
Thanks in advance



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