Geno Ontology Analysis
I did Gene ontology analysis of DEGs using R Bioconductor as following:
upBP_0.01= new("GOHyperGParams", geneIds=selectgenesup, universeGeneIds=universegenes, annotation="org.Pf.plasmo.db", ontology="BP", pvalueCutoff=0.01, conditional=FALSE, testDirection="over") upBP = hyperGTest(upBP_0.01) summary(upBP)
and i got the output:
How can I get the list of genes in each GO term?
Is there any R script for this issue?
How can I visualize them if possible?
Thank you in advance!
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