Generate a file with SNPs given a WGS dataset
Given whole genome sequencing or whole-exome sequencing datasets of the human genome, I need to generate a list of all the SNPs present in each of the datasets separately. In the best scenario the SNPs should be well annotated, as for their genes they belong to, their coordinates, and eventually additional attributes. The file should have a .csv format or some other similar format, since I need to upload it and manipulate some data from it.
How should I proceed?
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