Gene read count-level batch correction in scRNA-seq?

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Hi, I'm working on the integration of several scRNA-seq datasets. After trying Seurat v3 and Harmony, I realized they outputs dimension reduction matrix rather than correct read counts, therefore not suitable for some downstream analysis on gene-expression level. I wonder if there are any software that can correct batch effect on read counts.


NGS


single-cell


RNA


seq


sequencing

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