I want to compare the expression of a list of genes (mouse) in a specific organ e.g. lung. Also, the chromatin state e.g. which regions are repressed or transcriptionally active.
I think MGI gene expression database for gene expression and ENCODE for chromatin?
But I cannot figure out how to get chromatin information from ENCODE database...
I had a try at MGI expression database. does cM here means expression? how do I search for tissue specific expression?
MGI Gene ID Gene Symbol Gene Name Type Chr Genome Location-GRCm38 cM Strand MGI:97363 Notch1 notch 1 protein coding gene 2 26457902-26503822 18.91 - MGI:98834 Trp53 transformation related protein 53 protein coding gene 11 69580359-69591873 42.83 +