gravatar for Kai_Qi

2 hours ago by

Chicago, IL

Hi:

I used gencode GRCm38 GTF for annoation during reads counts using RSubread.

I can't get the gene symbol following the DEseq2 manual:

resTC$symbol <- mapIds(org.Mm.eg.db, keys = row.names(resTC), column = "SYMBOL", keytype = "ENSEMBL", multiVals = "first")

I looked over it again and found that the geneID I got is in this format:

ENSMUSG00000029848.11

So I manually put it this geneID into NCBI gene and it does not match anything. However, if I use ENSMUSG00000029848 it will tell me it is "Stra8".

Can anyone tell me how to solve this problem?

Thank you very much,

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modified 2 hours ago

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2 hours ago
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Kai_Qi100



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