Functional enrichment and visualization of metatranscriptomics data
I am new to clusterProfiler. Is it possible to use clusterProfiler for metatranscriptomics DEG data (deseq2)? As i read from yulab-smu.top/clusterProfiler-book/chapter3.html#input-data for unsupported organisms, one need to create TERM2GENE and TERM2NAME file, which according to the guide requires a organism specfic gmt file.
My sample is of mixed bacterial transcript expression (metatranscriptomics). I ran deseq2 and wanted to do functional gene enrichment analysis.
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