gravatar for kathryn.michel

2 hours ago by


I am using the Docker container for PHG and was wondering if there was a way to mount a single parent directory of fastq files, where the fastqs are organized into sub-directories based on what plate they came from.
I tried adding the sub-directory information to the key file in front of the file name, but PHG gave an error about not having directory information in the file name.

For the time being, I will probably just move all of my fastqs into a single folder, but would be interested in a method for referencing multiple directories of fastqs via a single mount point of the parent folder in the future.


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