2 hours ago by
Hi all!
I am trying to run findMotifs.pl for a list of IDs but it does not find the promoter set I am specifying. I would like to find motifs near the TSS of human promoters of hg19. For this, I am running:
findMotifs.pl input_ids.txt data/genomes/hg19/hg19.tss motif_results/ -start -400 -end 100 -len 6,10 -p 4
!!! data/genomes/hg19/hg19.tss not found in /HOMER_motif_analysis/.//config.txt
Try typing "perl /HOMER_motif_analysis/.//configureHomer.pl -list" to see available promoter sets
If avaliable, type "perl /HOMER_motif_analysis/.//configureHomer.pl -install data/genomes/hg19/hg19.tss" to install
I have run perl configureHomer.pl -list and I would like to use the following
PROMOTERS
human-p v5.5 human promoters (human)
Therefore, I have run the following:
perl configureHomer.pl -install human-p
But not sure how to specify this in the findMotifs.pl command... any help with this please?
Thanks in advance.
