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2 hours ago by

Hey all,
I am looking through large data sets to try and find a gene cluster or particular genes using sequence reads. The goal is to find a metagenomic set with the genes of interest, essentially just a probe to see if what I am looking for is there. Currently, I am using Bowtie2 but I was wondering if there were any other ways to go about this? And if Bowtie2 is the best option, are there particular parameters I should consider/set when doing the alignment?

Thanks!

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2 hours ago
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anabaena0



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