gravatar for charlesh

4 hours ago by

Hi,

I have 3 vcf files from WT and mut1, mut2
I would like to get a file with an intersection of common SNPs to the 2 Mutants, but absent from the WT sample.

I've run bcftools isec on all pairs of samples, but am hung up on using the resulting 3 sets of vcf files (0000, 00011,0002,0003) to identify SNPs common to the mutants, but absent from the WT.

Suggestions?
Charles



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