find overlapping transcripts
I used stringtie and scallop to assemble transcripts from a few RNAseq samples. Both tools generated annotated and novel transcripts in GTF format. I want to see the overlaps in annotated and novel transcripts between stringtie and scallop. Any recommendation for some handy tools? p.s. have looked at gffcompare, but it seems to work only on overlaps between a reference annotation and your sample gtf.
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