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2 hours ago by

Hello biostars,
Newbie here.
I am trying to match-up/align the quality scores of a FASTQ to its aligned sequence.

Is there an aligner from which I can extract 'aligned' quality scores or has that information in its output?

If the raw sequence is put through an aligner that takes a FASTA (converted from original FASTQ, hence stripped of the quality scores ), is there a way to unify the quality scores from the raw FASTQ to its aligned nucleotide?

thx

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2 hours ago
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LG0



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