FASTA of translated amino acid sequences in their six reading frames, which one is the optimal?
Hello, I'm sorry if my question is very basic, the truth is that until entering the PHD I had not had contact with programming languages other than HTML haha. I have a FASTA file that I create with the help of EMBOSS by translating the 6 reading frames of another nucleotide fasta file of a transncriptome, but now I need to filter those six frames to know which is the optimal one. I'm researching how to iterate in Python (yes, seriously, I'm just getting started on this) to see if that can help. Does anyone know if I am doing well or if there is any other more effective method? I'd appreciate any advice you can give me no matter what language or packages I need to install, I'm a bit desperate hahaha. Thank you and sorry for the inconvenience.
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