Extracting variant counts from Gnomad genome VCFs

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Hello,
I need to extract counts of synonymous and functional variants from gnomad v.3.1 genomes
gnomad.broadinstitute.org/downloads
I already have downloaded these genomes, extracted only exomic regions, and extracted desired population (european women only)

at the moment my file looks like this:

enter image description here

I know, how to gen snp counts from normal VCFs (using SNPEff tool); but I wonder how to extract variant counts from a file like this

Thank you!


gnomad

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