gravatar for Pierre Lindenbaum

2 hours ago by

France/Nantes/Institut du Thorax - INSERM UMR1087

use option -R , not option -T

-R, --regions-file <file>           restrict to regions listed in a file
-T, --targets-file [^]<file>        similar to -R but streams rather than index-jumps. Exclude regions with "^" prefix

furthermore your input file is not a BED file (chrom start end). I'm not sure it will work. (May be ?)

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