I am having a missense mutation at the last base of exon i.e. exon 13 of a gene having 15 coding ...
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I got some trouble parsing the genbank flatfile format that ncbi is using for data expor...
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I am trying to create index file using the splice site and exon information from the .g...
I would like to extract intron-exon reads (unspliced reads) from bam file. I tried use the with ...
When mRNA is transcribed from the chromosome, it briefly includes not only the exons with the pro...
I am using bioperl to obtain exon coordinates for a variety of mRNAs.... For example:
#!/usr/bi...
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Supposed I have a .gtf file with the exons of all genes in a given genome. I would l...
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I would like to know how I can extract the 1000 last nucleotides from sequence in a...
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I have a gff3 file and I want to extract the gene sequences (not including introns). Several...
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I am looking for a computational method to identify the number of instances of each alternat...
I'm interested in analyzing gene and mRNA annotations for the human genome. In addition to the ex...
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I am working with a data set of total rna. Already extracted a list of Biomart fro...
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I am trying to extract some data from my DEXseq results. I was able to get the final HTML rep...
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I'm reading the steps of generation of read counts in an RNA-seq study which are a...
I have a .gff3 file for an insect genome, which looks like the following:
> Scaffold1 I5K...
I have Illumina data of 1 x50bp from small RNA library. I am interested in identifying known and ...
I have a set of protein IDs. In reality there are thousands, but for this example, there are thes...
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i am currently doing an analysis on splice junctions at alternative exons, that belong to...
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I want to estimate the average length of each exon and intron (first 3 and last 3) from the...
I have the following program that I am analyzing and trying to understand. Overall purpose of ...
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I have a question I hope that someone here will be able to answer.
Its concerned with R...