2 hours ago by
Brazil
Hi, after a hard search on the net I found this awesome script (git.io/JfIjg). It works nice. However, I need to extract all exon sequence from a genome based on GFF3 and FASTA. Please, found here is.gd/gGMtUo a GFF3 sample file.
From that file I need to extract sequences like these:
Eucgr.A00001.1.v2.0.exon.1
ACTGTGACA......Eucgr.A00001.1.v2.0.exon.2
ACTGTGACA......Eucgr.A00001.1.v2.0.exon.3
ACTGTGACA......(...)
Eucgr.A00001.1.v2.0.exon.12
ACTGTGACA......(...)
Could you help me?
Thank you so much!
