gravatar for marcelolaia

2 hours ago by

Brazil

Hi, after a hard search on the net I found this awesome script (git.io/JfIjg). It works nice. However, I need to extract all exon sequence from a genome based on GFF3 and FASTA. Please, found here is.gd/gGMtUo a GFF3 sample file.
From that file I need to extract sequences like these:

Eucgr.A00001.1.v2.0.exon.1
ACTGTGACA......

Eucgr.A00001.1.v2.0.exon.2
ACTGTGACA......

Eucgr.A00001.1.v2.0.exon.3
ACTGTGACA......

(...)

Eucgr.A00001.1.v2.0.exon.12
ACTGTGACA......

(...)

Could you help me?
Thank you so much!

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marcelolaia0



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