Estimating the effective population size
I would like to estimate the effective population size using genotypes (0,1,2) in a VCF. I have seen several posts in this forum recommending the SNeP software. My challenges is that SNeP requires ACGT allelic variants which I don't have or I am not able to derive from my VCF file at the moment.
Any ideas of how I can go about this or another software out there that I can use for the analysis?
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