gravatar for zhangdengwei

2 hours ago by

Hi all,

I am using Mauve to re-order the assembled contigs, some sample worked well but some failed, and I got the following error

root alignment has 57 superintervals
root alignment length: 5472933
Organisms have 50.8% GC
Completed without error.
Alignment complete!
made reorder frame
shown
initing data
in process. . .
Exception in thread "Thread-52" java.lang.Error: Inconsistency error
at org.gel.mauve.tree.GISTree._splay(Unknown Source)
at org.gel.mauve.tree.GISTree.splay(Unknown Source)
at org.gel.mauve.tree.GISTree.find_seqindex(Unknown Source)
at org.gel.mauve.tree.GISTree.seqPosToColumn(Unknown Source)
at org.gel.mauve.XMFAAlignment.getLCBAndColumn(Unknown Source)
at org.gel.mauve.backbone.BackboneList.getNextBackbone(Unknown Source)
at org.gel.mauve.contigs.ContigGrouper$ContigGroup.getNonEmpty(Unknown Source)
at org.gel.mauve.contigs.ContigGrouper$ContigGroup.<init>(Unknown Source)
at org.gel.mauve.contigs.ContigGrouper.getContigGroup(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer.removeBadLCBs(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer.adjustLCBs(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer.process(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer.fixContigs(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer.initModelData(Unknown Source)
at org.gel.mauve.contigs.ContigReorderer$ReordererMauveFrame$1.run(Unknown Source)
at java.lang.Thread.run(Thread.java:745)

Is there anyone who know what happened? Any suggestions would be greatly appreciated!!!



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