Download all Bacteria accession list from NCBI
I want to download all the accession numbers of the bacteria proteins
From https://www.ncbi.nlm.nih.gov/protein/?term=Bacteria -->
send to -->
Format (Accession List) and
create file seems to not working for bacteria ( I tested with viruses, archaea and works perfectly)
After that, I tried to extract all accession numbers list via the command prompt, but I could not do so.
Even ncbi proposed command for the genomes doesn't seem to work "
command-line tool which gives
datasets download genome taxon 2 --filename bacteria.zip
I got this error unknown flag: --filename
I also tried to "change" some commands such as
genes like ...
datasets download gene taxon 2 --filename bacteria.zip, but it downloads the gene with id 2 (parses the term taxon)
and I also tried
Does anybody have an idea how to manipulate this issue?
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