Do EGA RNAseq .bam files come with gtf/gff file corresponding to the genome assembly used?
I have downloaded an RNAseq dataset .BAM files with the pyega3 tool at EGA.
I have also downloaded the .tar file that lists the experiments, runs, etc but do not see a .gtf or .gff file to run something like featureCounts on the BAM files.
Any input appreciated, feel like there may be an easy answer here.
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