Difference between Whole Exome Sequencing Pipeline for IonTorrent and Illumina?
I have a Whole Exome Sequence Pipeline for Paired End. I wanted to ask that is there any difference between pipeline for the data coming from IonTorrent and Illumina. Can I use the Fastq file of IonTorrent in the Illumina pipeline or do I have to change any parameters/tool in the pipeline for different data.
Hope this is understandable.
Thank you 🙂
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