gravatar for vartika

3 hours ago by

Why does changing minCount from 0 to 1 in dba.count() (with summits set to false and control reads supplied) change the called status of a peak? With minCount set to 1, a peak is being called in all samples, but with minCount set to 0, the same peak is being called in a few of them?

So, if minCount is set to 1, it will show the peak is called anyway? But that is not the case, cause there are peaks that are not called in half of the samples but called in the other half with minCount set to 1?

Am I missing something basic? What might be happening in my case?



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