defining input files for SeqIO
very silly question from an absolute newbie, but I am trying to run a python script I found online and am running into some issues with defining the genbank file that is required as the input for the script.
This is the beginning of the script:
#!/usr/bin/env python import sys import Bio from Bio import SeqIO, SeqFeature from Bio.SeqRecord import SeqRecord import os def get_interregions(genbank_path, intergene_length=1): seq_record = SeqIO.parse(open(genbank_path), "genbank").next()
I have tried replacing the both instances of genbank_path with the name of the gb file (both with and without quotation marks) or the path to the current folder, but I am either getting a syntax error or a message saying
"AttributeError: 'GenBankIterator' object has no attribute 'next'
Any suggestion would be much appreciated.
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