Creating numbered gene sets from a list of genes

2

Hello,
I have this type of file - 2 column list with genes in 1st and chromosomal position in second column.

        1:924024
        1:924310
SAMD11  1:930353
SAMD11  1:930939
NOC2L   1:944858
NOC2L   1:946247
KLHL17  1:960891
KLHL17  1:961945

It is needed to be converted to this list type, so that 2 column format is saved. Each set number goes for each gene.

1:na         1:924024
2:na         1:924310
3:SAMD11    1:930353
3:SAMD11    1:930939
4:NOC2L     1:944858
4:NOC2L     1:946247
5:KLHL17    1:960891
5:KLHL17    1:961945

Adding column numbers is easy, but is much more specific issue. Is there a way, how to do such thing in bash?

Thank you!


Bash


awk


geneset

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