Hi all,
in the NCBI PGAP using-guide, they mentioned that using this pipeline requires three f...
I would like to use blobtools to filter out contaminating sequences from by genome assemblies. In...
I am trying to use Geneious to do some expression analysis using Dseq2. I was going through the t...
Hello All,
I have exon datasets (aligned BAM) files downloaded. I now need the metadata informa...
Hello,
I am a real bioinformatic noob. I have to start a project to make an SNP dataset from scr...
Hello everyone.
I´m doing my first MDA using the GEO dataset 5583 (www.ncbi.nlm.nih.gov/...
Hello, I am very much new to this field of NGS and genomics. I am working with eukaryotic genome ...
I ran BCBio's variant2 pipeline on 10 input (sorted) bams (via a slightly modified gatk-variant.y...
I have a question regarding coverage levels of different scaffolds in an assembly to better my un...
I have a genome assembly in fasta format and the mapped reads in bam format.
I want to use amosv...
I have two genome assemblies created using different platforms for same species. I am doing some ...
I am trying to perform reference-based assembly. Most of the tutorials teach how to create a bam ...
I am using Kover (github.com/aldro61/kover) to predict AR in Klebsiella. The program fail...
Hello, everyone. I am learning to use Signac to analyze scATAC-seq data.I went through the workfl...
I am working with Whole-genome sequence analysis. I have to use the MSU7 rice genome as a referen...
I am trying to annotate a eukaryotic genome but every pipeline I find seems convoluted and comple...
This is a very simple question, but I cannot find the answer to it. I am working through the tuto...
I have a denovo assembled fasta file and reference genome fasta of the same. How can I make circo...
I am trying to learn single cell RNA-Seq data analysis. Right now I am following Seurat and Monoc...
I'm trying to run the example here: github.com/aldro61/kover2_paper/tree/master/data to r...
Hi everyone,
Just a quick question. I am learning how to annotate genomes using maker ([http://we...