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3 hours ago by

I have a output file produced by Control-FREEC, which is a file with coordinates of predicted copy number alterations. Information for each region:

  1. chromosome
  2. start position
  3. end position
  4. predicted copy number
  5. type of alteration and etc information's.

I have another file with about 38 genes and its chromosome location, start and end positions. i want to check if any of these 38 genes are present in the output file of control-freec.

Is there any tools available for this purpose? or what else can be done ?

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