I have a output file produced by Control-FREEC, which is a file with coordinates of predicted copy number alterations. Information for each region:
- start position
- end position
- predicted copy number
- type of alteration and etc information's.
I have another file with about 38 genes and its chromosome location, start and end positions. i want to check if any of these 38 genes are present in the output file of control-freec.
Is there any tools available for this purpose? or what else can be done ?