Converting .delta file from NUCMER to format accepted by IGV? (.bam/.vcf)
I'm currently having my first go at bioinformatics analysis of WGS data:) I used Nucmer to align my assembled sequence to a reference sequence and I would like to view the alignment in IGV (intergative genomics viewer), however it will only accept .bam/.vcf files and Nucmer output format is a .delta file. Is there a way to convert the delta file into sam/vcf format? Or alternatively, is there a software that allows to view/annotate alignments in .delta format?
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