gravatar for Goback

6 hours ago by

MD, US

Hi Biostars,

I downloaded the 5'UTR and 3'UTR bed file from the UCSC genome browser, then I used "bedToGenePred" and "genePredToGtf" to convert the bed file to gft file for featurecounts. after I got the gft file, I found the UTR regions were re-annotated as exon, CDS, transcripts, which made me confused. if I want to count reads mapping to the UTR region, shall I count all these features and then sum the result?

Thank you.



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