Comparing two variant files
I have two compare two excel files containing variants in sample 1 and sample 2. For this, which columns we have to take into consideration to find match and mismatch between two files.
Files contain columns as :
Locus Genotype Filter Ref Observed Allele Type No Call Reason Genes Location Length Copy Number CytoBand Info Variant ID Variant Name % Frequency Strand Exon Transcript Coding Amino Acid Change Variant Effect PhyloP SIFT Grantham PolyPhen FATHMM PFAM dbSNP DGV MAF EMAF AMAF GMAF UCSC Common SNPs ExAC LAF ExAC EAAF ExAC OAF ExAC EFAF ExAC SAAF ExAC ENFAF ExAC AAF ExAC GAF COSMIC OMIM Gene Ontology DRA DrugBank ClinVar Allele Coverage Allele Ratio CNV Confidence p-value Phred QUAL Score Coverage CNV Precision Ref+/Ref-/Var+/Var- Homopolymer Length Tiles Subset of
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