gravatar for rob.costa1234

2 hours ago by

United States

I have fastq files as follows:

Sample1-1_S13_R1_001.fastq
Sample1-2_S14_R1_001.fastq
Sample1-3_S15_R1_001.fastq
Sample1-4_S16_R1_001.fastq
Sample1-1_S13_R2_001.fastq
Sample1-2_S14_R2_001.fastq
Sample1-4_S16_R2_001.fastq
Sample1-3_S15_R2_001.fastq

I simply cat R1 and R2 but the tool I am using is giving me an error
Some files in the fastq path are split by lane, while some are not. This is not supported.
My question is is there another alternate to cat that to combine fastq files so that it can avoid this error or combine fatsq masking different lanes.
Thanks



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