gravatar for christoph.kreitzer93

2 hours ago by

Hi all 🙂

I am willing to use Somatic Copy Number Alteration - TCGA data (specifically TCGA-COAD) for some validation studies. I do know that segmented data is readily available to download, however, I am wondering whether there is a comprehensive file listing the clonality (clonal vs subclonal) of derived segments (for every sample in respective tumour type). Specifically, every SCNA-segment in patient X (e.g. COAD cancer) and corresponding clonality estimate (perhaps run on ABSOLUTE or related tools).

Many thanks,

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