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3 hours ago by

I am running CIRIquant on UBUNTU 20.04 LTS following the guidelines indicated on ciriquant-cookbook.readthedocs.io/en/latest/de.html. After a successful circRNA quantification step, I run the Differential expression analysis with biological replicates. I also run the prepDE.py -i sample_gene.lst step successfully.

But while running prep_CIRIquant using
prep_CIRIquant -i sample.lst
--lib library_info.csv
--circ circRNA_info.csv
--bsj circRNA_bsj.csv
--ratio circRNA_ratio.csv

I get an IndexError message:
File "/home/mamu/miniconda3/envs/py2/lib/python2.7/site-packages/CIRIquant-1.1-py2.7.egg/CIRIquant/prep_CIRIquant.py", line 89, in main
sample, sample_file, group = content[0], content[1], content[2]
IndexError: list index out of range.

I tried to search on the net about the issue and I didn't find any solutions yet.

Can you please help me in solving this issue?

I would like to thank you all in advance for your help.



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