I want to plot a histogram of my mapped reads to Virus genome. I keep getting the error "but the maximum is currently set at . To increase this number change
max_points_per_track in etc/housekeeping.conf." even though I had set my max to 50000"
I checked the max with circos -cdump :max but the maximum would not change from 25000. How can I fix this error and plot mapped reads per base?
Thank you for your help
####This is my circos.conf file#### karyotype = EBV_Karyotypes.txt chromosomes_units = 100000 <<include etc/colors_fonts_patterns.conf>> <<include etc/housekeeping.conf>> # IMAGE <image> <<include image.conf>> </image> # IDEOGRAM <ideogram> <spacing> default = 1u break = 1u </spacing> radius = 0.9r thickness = 100p fill = yes stroke_color = black stroke_thickness = 10p show_label = yes label_radius = 1.05r label_size = 80p label_parallel = yes </ideogram> # PLOTS <plots> type = histogram color = black fill_under = yes thickness = 1 <plot> file = test.txt r0 = 0.75r r1 = 0.98r min = 0 max = 50000 <rules> <rule> condition = 1 fill_color = eval(sprintf("rdbu-7-div-%d",remap_int(var(value),0,18000,1,7))) </rule> </rules> </plot> </plots>