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2 hours ago by

Hello All,

I used HG38 Borad variant for aligning my Chip-Seq files and noticed existence of contigs like chr20_KI270871v1_alt. What are they? Additionally, when I removed the blacklist regions from the resultant BED files using ENCSR636HFF (GRCH38), almost no filtering happened. Now I am worried that this contigs might represent these regions somehow.

Best Regards,
Farid Ahadli

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