gravatar for Elephantdumbo

4 hours ago by

Hey everyone,
I would like to align monemers based on tajima-nei distance. I have already generated the distance matrix and the monemers have the same alphabet as amino acids

For example 2 sequences I have would be.

seq1
RAKGKGTGKGKGV

seq2
RKGAKGVNMKG

I am trying to use muscle and use a custom matrix, but I am having trouble converting distance matrix to scoring matrix

Do you guys have any suggestion how to do that ?

Thank you so much



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