Can you lose unmapped reads in BAM file?

1

If you convert a BAM file to FASTQ that you know has unmapped reads, will it contain all of the original raw sequence data including the unmapped reads? Is there a chance you can lose some of the unmapped reads that was originally present in the FASTQ file? If so is dependent on whoever processed it and how can you find out that this might have occurred?


unmapped


reads


BAM

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