In a well annotated GTF/GFF file, The genomic coordinates of exons of genes are present. A gene c...
I have merged transcriptome assembly of 728 accessions and compare it with Arabidopsis refernce a...
I tried to run cuffcompare using cufflink assembled transcript output and an annotation file. I w...
Hi There,
I would like to identify novel splicing events occurring in 4 human paired-end RNA-seq...
Hi All,
so apparently, I have a problem with running tuxedo protocol.
Now I have run tophat on ...
When I compare the assembled transcripts with a reference annotation with cuffcompare, one of the...
Hi,
I am currently working on lncRNA using CNCI package. I have identified more than 10,000 coor...
Hi all,
I'm having some difficulties in understanding how cufflinks and cuffcompare count the as...
I have a cuffcompare.stats file that contains :
# Cuffcompare v2.2.1 | Command line was:
...
Hello guys,
I am new to RNA-SEQ data analysis. I am following the protocol submitt...
In RNA-seq mapping with TopHat, the exon-exon junctions are reported in junction.bed file. This i...
Hello!
I'm getting started in the field of bioinformatics and I'm developing a tool to analyze a...
Hi, I am trying to find novel transcripts from an RNA-seq database ([as mentioned in my previous ...