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3 hours ago by

New Zealand

I'm really liking RTG's vcfeval command, which takes in a gold standard vcf, a query vcf and a reference and outputs true positive vcf, true negative vcf, and the same for false positive, and false negative. My question is: is there some way to easily annotate the query vcf file so that each variant is annotated as TP, TN, FP and FN?

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Tails30



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