calculation synonymous and non-synonymous allele counts in a VCF file
I wouId like to get absolute numbers of functional and synonymous variants in VCF or tab-delimited txt files - only a raw count of how many coding and non-coding variants I have in a sequenced human exome sample or gnomAD v.3.1 genome file.
I was looking for similar threads here, but only found solutions for calculating d_N/d_S ratios, or approaches suitable for model organisms.
Is it possible to do it with Illumina Cloud tools?
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