9Jan

Building a phylogenetic tree based on some selected strains of bacteria sequences downloaded from ncbi

Posted by: admin Categories: Genetics
Comments Off on Building a phylogenetic tree based on some selected strains of bacteria sequences downloaded from ncbi


  • Meaning behind the path organization in NCBI ftp site

    I am getting some genomes from the ncbi ftp site, one of the genomes(Mus musculus) is

    ftp://...

  • How to remove a break line n in awk when print the result

    Dear all,

    I have an **inputfile.txt** which contains the following:

    ftp.ncbi.nlm.nih...

  • Error while annotating With SnpEff

    Hello All,

    I am trying to build the database for Rat genome for annotating with my .VCF files w...

  • what is the corresponding proteome or transcriptome (cDNA fasta in Ensembl) file in NCBI?

    Hi all,

    I am using Kallisto to quantify the transcript expression. I will use the transcriptome ...

  • How to extract all promoter regions in multi-fasta format from genome using GFF?

    Hi Everyone,

    How can I extract promoter sequences (ca. 1000bp upstream TSS) in multi-fasta forma...

  • How to download all the bacteria genomes from NCBI?

    wget ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/bacteria/assembly_summary.txt

    I download the...

  • What command generate blast database from file in all.fna folder?

    I downloaded genome of Bacteria, which file name is all.fna.tar.gz from ftp://ftp.ncbi.nlm.nih.go...

  • Human in NCBI Genomes

    I want to download the human annotation from NCBI Genomes. Searching the term *human* in

    [https:...

  • How to separate the largest strain when it has the genome of its chromosome

    I have large number of fasta files of bacteria from NCBI (in the GCF format) _genomic.fna.gz, an...

  • Generate local blast database with RefSeq bacteria AND taxonomy

    Dear all,

    I would like to be able to create my own custom local blast database, as this may be r...



    • Source link