BLASTX script doesn't print results and never ends

0

Hi.

I ran this script before and it worked fine. Maybe there's a small change that causes this. Also, there's no error message.

Here's the script:

#!/bin/bash
#PBS -N blastx
#PBS -e /err_and_out_files/blastx.ER
#PBS -o /err_and_out_files/blastx.OU
#PBS -l nodes=compute-0-311:ppn=20,mem=100gb
export BLASTDB="/bioseq/biodb/BLAST/Proteins2/taxdb"
module load blast/blast-2.10.0

blastx -query /output/fasta_files/btcaA1_filtered.fa -db /bioseq/biodb/BLAST/Proteins2/nr -max_hsps 1 -max_target_seqs 10 -num_threads 4 -evalue 1e-5 -out /output/blast/blastx/btcaA1_filtered.txt -outfmt "6 qseqid sseqid pident staxids sskingdoms qstart qend qlen length sstart send slen evalue mismatch gapopen bitscore stitle"

Thanks!


blastx


command-line

• 15 views



Source link